Does Logseq still support Markdown?
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It does, but how it supports Markdown has changed.
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See What is the difference between "Logseq" and "Logseq OG"? to understand how Markdown support has changed.
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See How to sync Logseq OG? for how to sync the older, Markdown version of Logseq.
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The new version of Logseq also has the ability to save a Markdown Mirror of your graph, but this is still in development.